DNA Generation and Manipulation script dna.sh help prints this message dna.sh <input file (.in)> Use a file as the input dna.sh <output command> <dna commands> <output command> → -o <output pdb> | -o stdout output to a pdb file or standard out <dna commands> → -c <dna command> [<dna commands>] define one or more dna commands <dna command> → <name to save to> <command> name must be uper or lower case characters <command> → read <input pdb> <chain in file> | generate <lowercase dna seqence> (A | B) | copy <name> | join <name> <residue number> <name> | modify <name> <operation> <operation> → rotate <source> <x rot> <y rot> <z rot> | translate <source> <delta x> <delta y> <delta z> | rotate_res <source> <residue to rotate about> <x rot> <y rot> <z rot> | center_res <source> <residue to center on> | align <source> <residue on source> <target chain> <residue on target> [<step> <step count>] example: dna.sh -o Temp.pdb \ -c F generate agtt A \ -c Q generate tcaagggtgtgatg B \ -c P generate tcaagggtgtgatg A \ -c R modify P rotate_res 5 120 -70 20 \ -c I join R 4 P \ -c F print \ -c I print \ -c Q print |
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