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Schrodinger Docs

posted Jul 15, 2016, 2:22 PM by Dong Xu   [ updated Nov 16, 2017, 8:35 AM ]

Maestro-11 Reference Card

https://www.schrodinger.com/sites/default/files/maestro_11_qrc.pdf

2017-4

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2017-4/docs/Documentation.htm

2017-3

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2017-3/docs/Documentation.htm

2017-1

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2017-1/docs/Documentation.htm

2016-4

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-4/docs/Documentation.htm

2016-3 Doc

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-3/docs/maestro/Documentation.htm

2016-2 Doc

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm

Running Jobs From the Command Line

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#job_control/running_jobs_command_line.htm#running_jobs_2725597_39764

FEP Mapper Tutorial

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#desmond_help/fep_mapper_tutorial.html

Running FEP Mapper jobs in umbrella mode

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#desmond_help/fep_mapper_umbrella.html

The Hosts File

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#install_guide/job_setup_hosts.htm%23job_setup_525780828_756747

Setup for SGE Queueing Systems

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#install_guide/batch_queue_sge.htm#batch_queue_1876641381_751531%3FTocPath%3DInstallation%2520and%2520Jobs%7CInstallation%2520Guide%7CPreparing%2520for%2520Batch%2520Queue%2520Submission%7CSetup%2520for%2520SGE%2520Queueing%2520Systems%7C_____0

Setting Up Access Manually From Linux and Mac Hosts

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#install_guide/job_setup_remote_linux_mac.htm#job_setup_525780828_755820

prime_mmgbsa—Calculate Ligand Binding Energies

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#prime_command_reference/mm_gbsa_output.htm#prime_commands_1525853049_786431%3FTocPath%3DCommand%2520References%7CPrime%2520Command%2520Reference%7CPrime%2520Command%2520Syntax%7Cprime_mmgbsa%25E2%2580%2594Calculate%2520Ligand%2520Binding%2520Energies%7C_____0

Prime MM-GBSA Command Input File

https://www.schrodinger.com/sites/default/files/s3/mkt/Documentation/2016-2/docs/maestro/Documentation.htm#prime_command_reference/prime_commands_mmgbsa_input.htm?Highlight=mm-gbsa

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